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Quantum Dynamic Investigations of Redox in Biology

US · IL NIH RePORTER grant awarded #nih-1R35GM158400-01

Summary

This project aims to develop a theoretical framework and simulation toolbox using quantum mechanics to understand redox processes in biology, focusing on kinetic factors, reaction pathways, and rates.

What they want

The project will build a theoretical framework using the path integral formulation of quantum mechanics to elucidate kinetic factors, uncover reaction pathways, and compute rates, accounting for quantum nature of charge transfer (zero-point energy, tunneling, quantum coherence). It will retain computational efficiency of classical molecular dynamics and integrate with multiscale methods like QM/MM. The framework will be demonstrated on model systems including a nitrification enzyme, a multi-metal center drug candidate, and a radical relay protein to answer key questions in redox biology regarding electron/proton transfer sequences, environmental effects on reactivity, and drivers of long-range electron transfer.
Deliverables
  • broadly applicable simulation toolbox for the characterization of redox processes in biology
Technical requirements
  • path integral formulation of quantum mechanics
  • classical molecular dynamics
  • QM/MM (Quantum Mechanics/Molecular Mechanics)
Quantum Dynamic Investigations of Redox in…
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