Summary
This project aims to develop a theoretical framework and simulation toolbox using quantum mechanics to understand redox processes in biology, focusing on kinetic factors, reaction pathways, and rates.
What they want
The project will build a theoretical framework using the path integral formulation of quantum mechanics to elucidate kinetic factors, uncover reaction pathways, and compute rates, accounting for quantum nature of charge transfer (zero-point energy, tunneling, quantum coherence). It will retain computational efficiency of classical molecular dynamics and integrate with multiscale methods like QM/MM. The framework will be demonstrated on model systems including a nitrification enzyme, a multi-metal center drug candidate, and a radical relay protein to answer key questions in redox biology regarding electron/proton transfer sequences, environmental effects on reactivity, and drivers of long-range electron transfer.
Deliverables
- broadly applicable simulation toolbox for the characterization of redox processes in biology
Technical requirements
- path integral formulation of quantum mechanics
- classical molecular dynamics
- QM/MM (Quantum Mechanics/Molecular Mechanics)